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marcksl1b MARCKS-like 1b [ Pimephales promelas (fathead minnow) ]

Gene ID: 120485267, updated on 21-Mar-2024

Summary

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Gene symbol
marcksl1b
Gene description
MARCKS-like 1b
Locus tag
F2P79_013125
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
zebrafish all
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Genomic context

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See marcksl1b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121233.1 (10093705..10096451, complement)

NW_024121233.1Genomic Context describing neighboring genes Neighboring gene zinc transporter 8-like Neighboring gene histone deacetylase 1 Neighboring gene fibronectin type III domain containing 5b Neighboring gene low density lipoprotein receptor adaptor protein 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121233 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MARCKS-related protein 1-B
Names
MARCKS-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121233.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    10093705..10096451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039680935.1 → XP_039536869.1  MARCKS-related protein 1-B

    Conserved Domains (1) summary
    pfam02063
    Location:5 → 208
    MARCKS; MARCKS family
Nucleotide Protein
Heading Accession and Version

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