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vtg1 vitellogenin 1 [ Pimephales promelas (fathead minnow) ]

Gene ID: 120477206, updated on 21-Mar-2024

Summary

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Gene symbol
vtg1
Gene description
vitellogenin 1
Locus tag
F2P79_023688
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Also known as
Vtg
Orthologs
zebrafish all
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Genomic context

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See vtg1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121145.1 (84312..93046)

NW_024121145.1Genomic Context describing neighboring genes Neighboring gene vitellogenin-like Neighboring gene vitellogenin-like Neighboring gene afadin- and alpha-actinin-binding protein-like Neighboring gene atrial natriuretic peptide receptor 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121145 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vitellogenin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121145.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    84312..93046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039668681.1 → XP_039524615.1  vitellogenin 1

    UniProtKB/TrEMBL
    Q9W6I2
    Conserved Domains (3) summary
    pfam01347
    Location:24 → 592
    Vitellogenin_N; Lipoprotein amino terminal region
    pfam09172
    Location:626 → 911
    DUF1943; Domain of unknown function (DUF1943)
    pfam09175
    Location:1145 → 1309
    DUF1944; Domain of unknown function (DUF1944)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases