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LOC120054211 zinc finger protein aebp2-like [ Salvelinus namaycush (lake trout) ]

Gene ID: 120054211, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120054211
Gene description
zinc finger protein aebp2-like
See related
EnsemblRapid:ENSSNMG00000032512
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus namaycush
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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Genomic context

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See LOC120054211 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
100 current SaNama_1.0 (GCF_016432855.1) 9 NC_052315.1 (55661670..55722126)

Chromosome 9 - NC_052315.1Genomic Context describing neighboring genes Neighboring gene reelin-like Neighboring gene pleckstrin homology domain-containing family A member 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052315.1 Chromosome 9 Reference SaNama_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESC/E(Z) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein aebp2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SaNama_1.0 Primary Assembly

Genomic

  1. NC_052315.1 Reference SaNama_1.0 Primary Assembly

    Range
    55661670..55722126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039001672.1 → XP_038857600.1  zinc finger protein aebp2-like isoform X1

    UniProtKB/TrEMBL
    A0A8U1C0B7
    Related
    ENSSNMP00000046348.1, ENSSNMT00000051144.1
    Conserved Domains (2) summary
    COG5048
    Location:258 → 334
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:261 → 281
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_039001674.1 → XP_038857602.1  zinc finger protein aebp2-like isoform X2

    UniProtKB/TrEMBL
    A0A8U1BQQ2
    Conserved Domains (2) summary
    COG5048
    Location:258 → 334
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:261 → 281
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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