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1700087I21Rik RIKEN cDNA 1700087I21 gene [ Mus musculus (house mouse) ]

Gene ID: 118567337, updated on 26-Oct-2024

Summary

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Official Symbol
1700087I21Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700087I21 geneprovided by MGI
Primary source
MGI:MGI:1923869
See related
AllianceGenome:MGI:1923869
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm34758
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Genomic context

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See 1700087I21Rik in Genome Data Viewer
Location:
14; 14 E2.3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (103623737..103687305)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_37499 Neighboring gene STARR-positive B cell enhancer ABC_E11579 Neighboring gene STARR-seq mESC enhancer starr_37500 Neighboring gene STARR-seq mESC enhancer starr_37501 Neighboring gene F-box and leucine-rich repeat protein 3 Neighboring gene MYC binding protein 2, E3 ubiquitin protein ligase Neighboring gene STARR-positive B cell enhancer mm9_chr14:103745967-103746268 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:103748726-103748913 Neighboring gene STARR-positive B cell enhancer ABC_E10839 Neighboring gene STARR-seq mESC enhancer starr_37502 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_37503 Neighboring gene STARR-positive B cell enhancer ABC_E10840 Neighboring gene STARR-positive B cell enhancer ABC_E5464 Neighboring gene predicted gene, 34907 Neighboring gene STARR-seq mESC enhancer starr_37505 Neighboring gene sciellin Neighboring gene STARR-seq mESC enhancer starr_37506

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166861.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114585

  2. NR_190450.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114585

  3. NR_190451.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114585

  4. NR_190452.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114585

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    103623737..103687305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

  2. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    103584335..103597918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004938587.1 RNA Sequence

  2. XR_004938586.1 RNA Sequence

  3. XR_004938588.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version