U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC117779438 uncharacterized LOC117779438 [ Homo sapiens (human) ]

Gene ID: 117779438, updated on 22-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC117779438
Gene description
uncharacterized LOC117779438
See related
Ensembl:ENSG00000227066
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC117779438 in Genome Data Viewer
Location:
1p36.12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (20154214..20160568)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (19977863..19984213)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (20480707..20487061)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene phospholipase A2 group IID Neighboring gene ATAC-STARR-seq lymphoblastoid active region 314 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20468424-20468924 Neighboring gene phospholipase A2 group IIF Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20474795-20475295 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:20476004-20476630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20479806-20480357 Neighboring gene phospholipase A2 group IIC Neighboring gene ATAC-STARR-seq lymphoblastoid active region 316 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:20511679-20512878 Neighboring gene UBX domain protein 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 317 Neighboring gene uncharacterized LOC105376825

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168501.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z98257

  2. NR_168502.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z98257
    Related
    ENST00000652935.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    20154214..20160568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    19977863..19984213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases