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LOC117469919 verrucotoxin subunit beta-like [ Trematomus bernacchii (emerald rockcod) ]

Gene ID: 117469919, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117469919
Gene description
verrucotoxin subunit beta-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Trematomus bernacchii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Trematomus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC117469919 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fTreBer1.1 (GCF_902827165.1) Unplaced Scaffold NW_022987895.1 (1988..17952, complement)

NW_022987895.1Genomic Context describing neighboring genes Neighboring gene verrucotoxin subunit beta-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022987895 Unplaced Scaffold Reference fTreBer1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
verrucotoxin subunit beta-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trematomus bernacchii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTreBer1.1

Genomic

  1. NW_022987895.1 Reference fTreBer1.1

    Range
    1988..17952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034114392.1 → XP_033970283.1  verrucotoxin subunit beta-like

    Conserved Domains (4) summary
    cd00063
    Location:603 → 699
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:509 → 589
    fn3; Fibronectin type III domain
    pfam18078
    Location:385 → 507
    Thioredoxin_11; Thioredoxin-like SNTX domain
    cl15257
    Location:26 → 79
    GIY-YIG_SF; GIY-YIG nuclease domain superfamily
Nucleotide Protein
Heading Accession and Version

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