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Snap25 synaptosome associated protein 25 [ Rattus rattus (black rat) ]

Gene ID: 116902019, updated on 18-Mar-2024

Summary

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Gene symbol
Snap25
Gene description
synaptosome associated protein 25
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus rattus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
SNAP-25A; SNAP-25B
Orthologs
human mouse all
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Genomic context

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See Snap25 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 5 NC_046158.1 (116317347..116390077)

Chromosome 5 - NC_046158.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and EF-hand domain-containing protein 1-like Neighboring gene ankyrin repeat and EF-hand domain containing 1 Neighboring gene MKKS centrosomal shuttling protein Neighboring gene SLX4 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046158.1 Chromosome 5 Reference Rrattus_CSIRO_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin-1 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle priming IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptosomal-associated protein 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rrattus_CSIRO_v1 Primary Assembly

Genomic

  1. NC_046158.1 Reference Rrattus_CSIRO_v1 Primary Assembly

    Range
    116317347..116390077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032904292.1 → XP_032760183.1  synaptosomal-associated protein 25 isoform X2

    Conserved Domains (3) summary
    cd15885
    Location:143 → 201
    SNARE_SNAP25C; C-terminal SNARE motif of SNAP25
    cd15894
    Location:10 → 82
    SNARE_SNAP25N; N-terminal SNARE motif of SNAP25
    pfam00835
    Location:91 → 141
    SNAP-25; SNAP-25 family

  2. XM_032904291.1 → XP_032760182.1  synaptosomal-associated protein 25 isoform X1

    Conserved Domains (3) summary
    cd15885
    Location:143 → 201
    SNARE_SNAP25C; C-terminal SNARE motif of SNAP25
    cd15894
    Location:10 → 82
    SNARE_SNAP25N; N-terminal SNARE motif of SNAP25
    pfam00835
    Location:91 → 141
    SNAP-25; SNAP-25 family
Nucleotide Protein
Heading Accession and Version

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