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Pxn paxillin [ Rattus rattus (black rat) ]

Gene ID: 116885304, updated on 18-Mar-2024

Summary

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Gene symbol
Pxn
Gene description
paxillin
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus rattus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Orthologs
human mouse all
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Genomic context

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See Pxn in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 16 NC_046169.1 (38270797..38318050, complement)

Chromosome 16 - NC_046169.1Genomic Context describing neighboring genes Neighboring gene GCN1 activator of EIF2AK4 Neighboring gene ribosomal protein lateral stalk subunit P0 Neighboring gene 40S ribosomal protein S5-like Neighboring gene U4 spliceosomal RNA Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046169.1 Chromosome 16 Reference Rrattus_CSIRO_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endothelial cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paxillin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rrattus_CSIRO_v1 Primary Assembly

Genomic

  1. NC_046169.1 Reference Rrattus_CSIRO_v1 Primary Assembly

    Range
    38270797..38318050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032886555.1 → XP_032742446.1  paxillin isoform X2

    Conserved Domains (5) summary
    cd09338
    Location:476 → 528
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:417 → 468
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:535 → 586
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:358 → 410
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    pfam03535
    Location:54 → 253
    Paxillin; Paxillin family

  2. XM_032886556.1 → XP_032742447.1  paxillin isoform X3

    Conserved Domains (5) summary
    cd09338
    Location:471 → 523
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:412 → 463
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:530 → 581
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:353 → 405
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    pfam03535
    Location:54 → 282
    Paxillin; Paxillin family

  3. XM_032886557.1 → XP_032742448.1  paxillin isoform X4

    Conserved Domains (5) summary
    cd09338
    Location:442 → 494
    LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
    cd09407
    Location:383 → 434
    LIM2_Paxillin; The second LIM domain of paxillin
    cd09411
    Location:501 → 552
    LIM4_Paxillin; The fourth LIM domain of Paxillin
    cd09336
    Location:324 → 376
    LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
    pfam03535
    Location:54 → 253
    Paxillin; Paxillin family

  4. XM_032886554.1 → XP_032742445.1  paxillin isoform X1

    Conserved Domains (1) summary
    pfam03535
    Location:54 → 253
    Paxillin; Paxillin family

  5. XM_032886558.1 → XP_032742449.1  paxillin isoform X5

    Conserved Domains (1) summary
    pfam03535
    Location:1 → 120
    Paxillin; Paxillin family
Nucleotide Protein
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