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HNRNPM heterogeneous nuclear ribonucleoprotein M [ Aythya fuligula (tufted duck) ]

Gene ID: 116499112, updated on 25-Jun-2024

Summary

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Gene symbol
HNRNPM
Gene description
heterogeneous nuclear ribonucleoprotein M
See related
EnsemblRapid:ENSAFUG00000005604
Gene type
protein coding
RefSeq status
MODEL
Organism
Aythya fuligula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Orthologs
human mouse all
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Genomic context

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See HNRNPM in Genome Data Viewer
Location:
chromosome: 26
Exon count:
18
Annotation release Status Assembly Chr Location
100 current bAytFul2.pri (GCF_009819795.1) 26 NC_045584.1 (3323862..3348209)

Chromosome 26 - NC_045584.1Genomic Context describing neighboring genes Neighboring gene death associated protein kinase 3 Neighboring gene nicotinamide riboside kinase 2 Neighboring gene translocase of inner mitochondrial membrane 44 Neighboring gene cortexin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045584.1 Chromosome 26 Reference bAytFul2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA stability involved in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAytFul2.pri Primary Assembly

Genomic

  1. NC_045584.1 Reference bAytFul2.pri Primary Assembly

    Range
    3323862..3348209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032203731.1 → XP_032059622.1  heterogeneous nuclear ribonucleoprotein M isoform X2

    UniProtKB/TrEMBL
    A0A6J3ECI2
    Related
    ENSAFUP00000007631.1, ENSAFUT00000009416.1
    Conserved Domains (5) summary
    pfam11532
    Location:63 → 92
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:94 → 169
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:227 → 302
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:650 → 726
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:369 → 610
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  2. XM_032203730.1 → XP_032059621.1  heterogeneous nuclear ribonucleoprotein M isoform X1

    UniProtKB/TrEMBL
    A0A6J3E7F6
    Related
    ENSAFUP00000007627.1, ENSAFUT00000009412.1
    Conserved Domains (5) summary
    pfam11532
    Location:63 → 92
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:94 → 169
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:227 → 302
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:683 → 759
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:369 → 643
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  3. XM_032203732.1 → XP_032059623.1  heterogeneous nuclear ribonucleoprotein M isoform X3

    UniProtKB/TrEMBL
    A0A6J3EE84
    Related
    ENSAFUP00000007646.1, ENSAFUT00000009432.1
    Conserved Domains (5) summary
    pfam11532
    Location:63 → 92
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:94 → 169
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:227 → 302
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:649 → 725
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:335 → 609
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  4. XM_032203733.1 → XP_032059624.1  heterogeneous nuclear ribonucleoprotein M isoform X4

    UniProtKB/TrEMBL
    A0A6J3E8Z4
    Conserved Domains (4) summary
    cd12659
    Location:101 → 176
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:557 → 633
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:243 → 517
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA
    cl17169
    Location:1 → 43
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_032203734.1 → XP_032059625.1  heterogeneous nuclear ribonucleoprotein M isoform X4

    UniProtKB/TrEMBL
    A0A6J3E8Z4
    Conserved Domains (4) summary
    cd12659
    Location:101 → 176
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:557 → 633
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:243 → 517
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA
    cl17169
    Location:1 → 43
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_004254211.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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