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gja13.1 gap junction protein alpha 13.1 [ Perca flavescens (yellow perch) ]

Gene ID: 114573382, updated on 15-Mar-2024

Summary

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Gene symbol
gja13.1
Gene description
gap junction protein alpha 13.1
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Also known as
cx32.3; gja13.2
Orthologs
zebrafish all
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Genomic context

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See gja13.1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
1
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 18 NC_041348.1 (26057029..26057856, complement)

Chromosome 18 - NC_041348.1Genomic Context describing neighboring genes Neighboring gene chromosome 18 C1orf198 homolog Neighboring gene gap junction Cx32.2 protein-like Neighboring gene gap junction protein, alpha 11 Neighboring gene hydroxysteroid dehydrogenase like 1 Neighboring gene TBC1 domain family, member 32

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041348.1 Chromosome 18 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of connexin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gap junction Cx32.2 protein-like
Names
connexin 32.3
gap junction protein alpha 13.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041348.1 Reference PFLA_1.0 Primary Assembly

    Range
    26057029..26057856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028605556.1 → XP_028461357.1  gap junction Cx32.2 protein-like

    Conserved Domains (1) summary
    pfam00029
    Location:3 → 217
    Connexin
Nucleotide Protein
Heading Accession and Version

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