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LOC11443082 translocon-associated protein subunit beta [ Medicago truncatula (barrel medic) ]

Gene ID: 11443082, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11443082
Gene description
translocon-associated protein subunit beta
Locus tag
MtrunA17_Chr7g0251791
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11443082 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (38913314..38916296)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (32149781..32152765)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase T3 Neighboring gene uncharacterized LOC112416692 Neighboring gene zinc finger protein CONSTANS-LIKE 15 Neighboring gene GEM-like protein 5 Neighboring gene pollen-specific leucine-rich repeat extensin-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
translocon-associated protein subunit beta
Names
translocon-associated protein beta family-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    38913314..38916296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003624411.4 → XP_003624459.1  translocon-associated protein subunit beta

    See identical proteins and their annotated locations for XP_003624459.1

    UniProtKB/TrEMBL
    A0A072UCB1, G7KW77
    Conserved Domains (1) summary
    pfam05753
    Location:13 → 182
    TRAP_beta; Translocon-associated protein beta (TRAPB)
Nucleotide Protein
Heading Accession and Version

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