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LOC11440199 cytochrome P450 84A1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11440199, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11440199
Gene description
cytochrome P450 84A1
Locus tag
MtrunA17_Chr4g0035921
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11440199 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (35214203..35218483)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (27144721..27149051, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT3.9 Neighboring gene GATA transcription factor 7 Neighboring gene TATA box-binding protein-associated factor RNA polymerase I subunit B Neighboring gene deoxycytidylate deaminase-like Neighboring gene fructose-bisphosphate aldolase 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 84A1
Names
cytochrome P450 family monooxygenase
putative cytochrome P450

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    35214203..35218483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003607010.3 → XP_003607058.1  cytochrome P450 84A1

    See identical proteins and their annotated locations for XP_003607058.1

    UniProtKB/TrEMBL
    G7JJV2
    Conserved Domains (1) summary
    cl12078
    Location:1 → 518
    p450; Cytochrome P450
Nucleotide Protein
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