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LOC11439858 uncharacterized protein C630.12 [ Medicago truncatula (barrel medic) ]

Gene ID: 11439858, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11439858
Gene description
uncharacterized protein C630.12
Locus tag
MtrunA17_Chr8g0345491
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11439858 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (8526760..8533084, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (8557959..8564297, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 7 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 6 Neighboring gene uncharacterized LOC112417500 Neighboring gene uncharacterized LOC112417220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein C630.12
Names
putative metallo-dependent phosphatase
serine/threonine-protein phosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    8526760..8533084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003627437.4 → XP_003627485.1  uncharacterized protein C630.12

    See identical proteins and their annotated locations for XP_003627485.1

    UniProtKB/TrEMBL
    G7L9Y4
    Conserved Domains (1) summary
    cd07384
    Location:56 → 322
    MPP_Cdc1_like; Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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