U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC11439615 multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b [ Medicago truncatula (barrel medic) ]

Gene ID: 11439615, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC11439615
Gene description
multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
Locus tag
MtrunA17_Chr8g0371691
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
Also known as
AT5G66180
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC11439615 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (34367973..34371535)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (31899491..31902991)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene probable rRNA-processing protein EBP2 homolog Neighboring gene rhodanese-like domain-containing protein 17 Neighboring gene disease resistance protein RUN1 Neighboring gene putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
  2. Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. Zeng L, et al. New Phytol, 2017 May. PMID 28294342
  3. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
Names
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
putative 16S rRNA (cytosine(967)-C(5))-methyltransferase
putative multisite-specific tRNA:(cytosine-C(5))-methyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    34367973..34371535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024772808.2 → XP_024628576.1  multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b isoform X1

    UniProtKB/TrEMBL
    I3SDR7
    Conserved Domains (1) summary
    cl25484
    Location:35 → 388
    Methyltr_RsmF_N; N-terminal domain of 16S rRNA methyltransferase RsmF

  2. XM_003629242.4 → XP_003629290.1  multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b isoform X2

    See identical proteins and their annotated locations for XP_003629290.1

    UniProtKB/TrEMBL
    G7LC16, I3SDR7
    Conserved Domains (1) summary
    cl17173
    Location:99 → 385
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases