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LOC11436468 exosome complex exonuclease RRP46 homolog [ Medicago truncatula (barrel medic) ]

Gene ID: 11436468, updated on 11-Apr-2024

Summary

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Gene symbol
LOC11436468
Gene description
exosome complex exonuclease RRP46 homolog
Locus tag
MtrunA17_Chr7g0247281
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11436468 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (35756395..35759795)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (29053954..29057335)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene O-glucosyltransferase rumi Neighboring gene FT-interacting protein 3 Neighboring gene kiwellin-1 Neighboring gene 60S ribosomal protein L8-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex exonuclease RRP46 homolog
Names
putative ribonuclease PH, bacterial-type, PNPase/RNase PH domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    35756395..35759795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003623861.4 → XP_003623909.1  exosome complex exonuclease RRP46 homolog

    See identical proteins and their annotated locations for XP_003623909.1

    UniProtKB/TrEMBL
    A0A396H5B8, G7L3K7
    Conserved Domains (2) summary
    cd11372
    Location:14 → 228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
    COG0689
    Location:5 → 228
    Rph; Ribonuclease PH [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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