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LOC11436179 UDP-rhamnose/UDP-galactose transporter 4 [ Medicago truncatula (barrel medic) ]

Gene ID: 11436179, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11436179
Gene description
UDP-rhamnose/UDP-galactose transporter 4
Locus tag
MtrunA17_Chr8g0383381
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11436179 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (42682800..42687406, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (38521725..38526295, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene neutral/alkaline invertase 3, chloroplastic Neighboring gene mediator of RNA polymerase II transcription subunit 28 Neighboring gene small nuclear ribonucleoprotein SmD3b Neighboring gene uncharacterized LOC11436180

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-rhamnose/UDP-galactose transporter 4
Names
nucleotide/sugar transporter family protein
putative sugar phosphate transporter domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    42682800..42687406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003630088.3 → XP_003630136.1  UDP-rhamnose/UDP-galactose transporter 4 isoform X2

    See identical proteins and their annotated locations for XP_003630136.1

    UniProtKB/TrEMBL
    G7LBD2
    Conserved Domains (1) summary
    cl26744
    Location:10 → 298
    TPT; Triose-phosphate Transporter family

  2. XM_024771652.2 → XP_024627420.1  UDP-rhamnose/UDP-galactose transporter 4 isoform X2

    UniProtKB/TrEMBL
    G7LBD2
    Conserved Domains (1) summary
    cl26744
    Location:10 → 298
    TPT; Triose-phosphate Transporter family

  3. XM_024771651.2 → XP_024627419.1  UDP-rhamnose/UDP-galactose transporter 4 isoform X1

    Conserved Domains (1) summary
    cl26744
    Location:31 → 319
    TPT; Triose-phosphate Transporter family
Nucleotide Protein
Heading Accession and Version

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