U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC11435052 protein SUPPRESSOR OF GENE SILENCING 3 [ Medicago truncatula (barrel medic) ]

Gene ID: 11435052, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC11435052
Gene description
protein SUPPRESSOR OF GENE SILENCING 3
Locus tag
MtrunA17_Chr3g0131301
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC11435052 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (48293902..48298636, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (44848540..44853244, complement)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At5g08490 Neighboring gene protein SUPPRESSOR OF GENE SILENCING 3 Neighboring gene GDSL esterase/lipase At5g08460 Neighboring gene pentatricopeptide repeat-containing protein At5g48910

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SUPPRESSOR OF GENE SILENCING 3
Names
putative XS domain-containing protein
suppressor OF protein silencing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    48293902..48298636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003602667.4 → XP_003602715.1  protein SUPPRESSOR OF GENE SILENCING 3

    See identical proteins and their annotated locations for XP_003602715.1

    UniProtKB/TrEMBL
    A0A396J031, G7J2Q1
    Conserved Domains (2) summary
    pfam03470
    Location:246 → 284
    zf-XS; XS zinc finger domain
    pfam03468
    Location:317 → 435
    XS; XS domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases