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LOC114324141 ABSCISIC ACID-INSENSITIVE 5-like protein 3 [ Camellia sinensis ]

Gene ID: 114324141, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114324141
Gene description
ABSCISIC ACID-INSENSITIVE 5-like protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114324141 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021025367.1 (344476..351891)

NW_021025367.1Genomic Context describing neighboring genes Neighboring gene phosphopantothenate--cysteine ligase 2-like Neighboring gene transcription factor TGA1-like Neighboring gene protein bfr2-like Neighboring gene U-box domain-containing protein 16-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021025367 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. Shi CY, et al. BMC Genomics, 2011 Feb 28. PMID 21356090, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABSCISIC ACID-INSENSITIVE 5-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021025367.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    344476..351891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028271886.1 → XP_028127687.1  ABSCISIC ACID-INSENSITIVE 5-like protein 3

    UniProtKB/TrEMBL
    A0A4S4F1I7
    Conserved Domains (1) summary
    cd14707
    Location:249 → 294
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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