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LOC114324139 EPIDERMAL PATTERNING FACTOR-like protein 6 [ Camellia sinensis ]

Gene ID: 114324139, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114324139
Gene description
EPIDERMAL PATTERNING FACTOR-like protein 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114324139 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021025367.1 (182565..184218)

NW_021025367.1Genomic Context describing neighboring genes Neighboring gene ATP synthase delta chain, chloroplastic Neighboring gene angio-associated migratory cell protein Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021025367 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome and metabolite analysis identifies nitrogen utilization genes in tea plant (Camellia sinensis). Li W, et al. Sci Rep, 2017 May 10. PMID 28490757, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in guard cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stomatal complex development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EPIDERMAL PATTERNING FACTOR-like protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021025367.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    182565..184218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028271885.1 → XP_028127686.1  EPIDERMAL PATTERNING FACTOR-like protein 6

    Conserved Domains (1) summary
    pfam17181
    Location:65 → 110
    EPF; Epidermal patterning factor proteins
Nucleotide Protein
Heading Accession and Version

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