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LOC11430807 MYG1 exonuclease [ Medicago truncatula (barrel medic) ]

Gene ID: 11430807, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11430807
Gene description
MYG1 exonuclease
Locus tag
MtrunA17_Chr3g0127371
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11430807 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (45471317..45475942, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (42011272..42015944, complement)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11437924 Neighboring gene molybdate-anion transporter Neighboring gene rhodanese-like domain-containing protein 14, chloroplastic Neighboring gene AAA-ATPase At2g46620 Neighboring gene ATPase family AAA domain-containing protein 1-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MYG1 exonuclease
Names
UPF0160 protein MYG1, mitochondrial
metal-dependent protein hydrolase
putative metal-dependent protein hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    45471317..45475942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024780073.2 → XP_024635841.1  MYG1 exonuclease

    UniProtKB/TrEMBL
    G7J863
    Conserved Domains (1) summary
    pfam03690
    Location:24 → 343
    UPF0160; Uncharacterized protein family (UPF0160)

  2. XM_024780075.2 → XP_024635843.1  MYG1 exonuclease

    UniProtKB/TrEMBL
    G7J863
    Conserved Domains (1) summary
    pfam03690
    Location:24 → 343
    UPF0160; Uncharacterized protein family (UPF0160)

  3. XM_024780074.2 → XP_024635842.1  MYG1 exonuclease

    UniProtKB/TrEMBL
    G7J863
    Conserved Domains (1) summary
    pfam03690
    Location:24 → 343
    UPF0160; Uncharacterized protein family (UPF0160)

  4. XM_003602262.3 → XP_003602310.1  MYG1 exonuclease

    See identical proteins and their annotated locations for XP_003602310.1

    UniProtKB/TrEMBL
    G7J863
    Conserved Domains (1) summary
    pfam03690
    Location:24 → 343
    UPF0160; Uncharacterized protein family (UPF0160)

RNA

  1. XR_003010571.2 RNA Sequence

  2. XR_003010569.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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