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LOC11429973 potassium channel AKT1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11429973, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11429973
Gene description
potassium channel AKT1
Locus tag
MtrunA17_Chr3g0138131
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11429973 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (53153390..53159286)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (49698643..49704380)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene GTP-binding nuclear protein Ran/TC4 Neighboring gene GTP-binding nuclear protein Ran/TC4 Neighboring gene probable boron transporter 7 Neighboring gene probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium channel AKT1
Names
inwardly rectifying potassium channel subunit
putative potassium channel, voltage-dependent, EAG/ELK/ERG
putative potassium channel, voltage-dependent, EAG/ELK/ERG, ankyrin repeat-containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    53153390..53159286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003603390.4 → XP_003603438.1  potassium channel AKT1

    See identical proteins and their annotated locations for XP_003603438.1

    UniProtKB/TrEMBL
    G7JBM3
    Conserved Domains (6) summary
    PLN03192
    Location:32 → 883
    PLN03192; Voltage-dependent potassium channel; Provisional
    cd00038
    Location:390 → 493
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    cd00204
    Location:563 → 714
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam07885
    Location:258 → 312
    Ion_trans_2; Ion channel
    pfam11834
    Location:820 → 882
    KHA; KHA, dimerization domain of potassium ion channel
    sd00045
    Location:531 → 566
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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