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LOC11424704 oxysterol-binding protein-related protein 4C [ Medicago truncatula (barrel medic) ]

Gene ID: 11424704, updated on 11-Apr-2024

Summary

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Gene symbol
LOC11424704
Gene description
oxysterol-binding protein-related protein 4C
Locus tag
MtrunA17_Chr4g0071881
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11424704 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (61074305..61076991)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (52930384..52933058)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 5 homolog A Neighboring gene subtilisin-like protease SBT2.5 Neighboring gene oxysterol-binding protein-related protein 4C Neighboring gene uncharacterized LOC11445795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxysterol-binding protein-related protein 4C
Names
OSBP(oxysterol-binding protein)-related protein 4C
putative oxysterol-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    61074305..61076991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003610012.4 → XP_003610060.1  oxysterol-binding protein-related protein 4C isoform X2

    See identical proteins and their annotated locations for XP_003610060.1

    UniProtKB/TrEMBL
    G7JUB3
    Conserved Domains (1) summary
    pfam01237
    Location:43 → 365
    Oxysterol_BP; Oxysterol-binding protein

  2. XM_003610013.4 → XP_003610061.1  oxysterol-binding protein-related protein 4C isoform X1

    See identical proteins and their annotated locations for XP_003610061.1

    UniProtKB/TrEMBL
    G7JUB2
    Conserved Domains (1) summary
    pfam01237
    Location:45 → 276
    Oxysterol_BP; Oxysterol-binding protein
Nucleotide Protein
Heading Accession and Version

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