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LOC11417543 binding partner of ACD11 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11417543, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11417543
Gene description
binding partner of ACD11 1
Locus tag
MtrunA17_Chr5g0416421
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11417543 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (17125297..17129191, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (17213441..17217325, complement)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120580605 Neighboring gene putative protein TIC 214 N-terminal part Neighboring gene transcription factor PRE6 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
binding partner of ACD11 1
Names
RNA recognition motif
putative nucleotide-binding alpha-beta plait domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    17125297..17129191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003613606.4 → XP_003613654.1  binding partner of ACD11 1

    See identical proteins and their annotated locations for XP_003613654.1

    UniProtKB/TrEMBL
    B7FK95, I3T9E3
    Conserved Domains (1) summary
    PLN03121
    Location:5 → 249
    PLN03121; nucleic acid binding protein; Provisional
Nucleotide Protein
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