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LOC11416397 glucose-induced degradation protein 4 homolog [ Medicago truncatula (barrel medic) ]

Gene ID: 11416397, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11416397
Gene description
glucose-induced degradation protein 4 homolog
Locus tag
MtrunA17_Chr4g0008961
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11416397 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (6952960..6957820, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (6475437..6480310, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene uracil phosphoribosyltransferase Neighboring gene delta-1-pyrroline-5-carboxylate synthase Neighboring gene eukaryotic translation initiation factor 6-2 Neighboring gene disease resistance protein RUN1-like Neighboring gene disease resistance protein RPP4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein catabolic process in the vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucose-induced degradation protein 4 homolog
Names
putative vacuolar import/degradation protein Vid24

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    6952960..6957820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003604800.4 → XP_003604848.2  glucose-induced degradation protein 4 homolog

    UniProtKB/TrEMBL
    A0A0C3WSS7, G7JSA6, I3SKK9
    Conserved Domains (1) summary
    pfam09783
    Location:31 → 199
    Vac_ImportDeg; Vacuolar import and degradation protein
Nucleotide Protein
Heading Accession and Version

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