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LOC11412416 leucine-rich repeat-containing protein 9 [ Medicago truncatula (barrel medic) ]

Gene ID: 11412416, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11412416
Gene description
leucine-rich repeat-containing protein 9
Locus tag
MtrunA17_Chr2g0321711
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11412416 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (42589258..42593972)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (36500784..36505514)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene F-box protein At2g27310 Neighboring gene intracellular protein transport protein USO1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 9
Names
protein phosphatase 1 regulatory subunit SDS22
putative leucine-rich repeat domain, L domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    42589258..42593972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003596816.4 → XP_003596864.1  leucine-rich repeat-containing protein 9

    See identical proteins and their annotated locations for XP_003596864.1

    UniProtKB/TrEMBL
    B7FM51, G7IHH7
    Conserved Domains (2) summary
    COG4886
    Location:18 → 233
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:23 → 42
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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