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LOC11412169 protein RTE1-HOMOLOG [ Medicago truncatula (barrel medic) ]

Gene ID: 11412169, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11412169
Gene description
protein RTE1-HOMOLOG
Locus tag
MtrunA17_Chr5g0404821
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11412169 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (8149720..8151797)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (8129600..8131674)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11412168 Neighboring gene protein WALLS ARE THIN 1 Neighboring gene thioredoxin H1 Neighboring gene beta-galactosidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RTE1-HOMOLOG
Names
protein reversion-TO-ethylene SENSITIVITY protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    8149720..8151797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003612042.4 → XP_003612090.1  protein RTE1-HOMOLOG

    See identical proteins and their annotated locations for XP_003612090.1

    UniProtKB/TrEMBL
    B7FKX1
    Conserved Domains (1) summary
    pfam05608
    Location:43 → 178
    DUF778; Protein of unknown function (DUF778)
Nucleotide Protein
Heading Accession and Version

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