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LOC11406053 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 [ Medicago truncatula (barrel medic) ]

Gene ID: 11406053, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11406053
Gene description
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6
Locus tag
MtrunA17_Chr2g0321691
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11406053 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (42570373..42576869)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (36481885..36488401)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene casparian strip membrane protein 4-like Neighboring gene uncharacterized LOC120578284 Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene leucine-rich repeat-containing protein 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6
Names
OTU domain-containing protein 5-B
OTU-like cysteine protease
putative ubiquitinyl hydrolase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    42570373..42576869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024776622.2 → XP_024632390.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6

    UniProtKB/TrEMBL
    A0A0C3V6W0, G7IHG3
    Conserved Domains (1) summary
    cl19932
    Location:251 → 360
    OTU; OTU-like cysteine protease

  2. XM_003596802.4 → XP_003596850.2  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6

    UniProtKB/TrEMBL
    A0A0C3V6W0, G7IHG3
    Conserved Domains (1) summary
    cl19932
    Location:251 → 360
    OTU; OTU-like cysteine protease

  3. XM_024776624.2 → XP_024632392.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6

    UniProtKB/TrEMBL
    A0A0C3V6W0, G7IHG3
    Conserved Domains (1) summary
    cl19932
    Location:251 → 360
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version

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