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LOC11405663 beta-galactosidase 3 [ Medicago truncatula (barrel medic) ]

Gene ID: 11405663, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11405663
Gene description
beta-galactosidase 3
Locus tag
MtrunA17_Chr5g0404841
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11405663 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (8157309..8163122, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (8137186..8143028, complement)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene protein RTE1-HOMOLOG Neighboring gene thioredoxin H1 Neighboring gene ribosomal RNA small subunit methyltransferase, mitochondrial Neighboring gene 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase 3
Names
putative beta-galactosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    8157309..8163122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003612044.4 → XP_003612092.1  beta-galactosidase 3

    See identical proteins and their annotated locations for XP_003612092.1

    UniProtKB/TrEMBL
    G7KGA8
    Conserved Domains (1) summary
    cl26201
    Location:1 → 838
    GanA; Beta-galactosidase GanA [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases