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LOC113732693 probable RNA helicase SDE3 [ Coffea arabica (coffee) ]

Gene ID: 113732693, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113732693
Gene description
probable RNA helicase SDE3
Gene type
protein coding
RefSeq status
MODEL
Organism
Coffea arabica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Genomic context

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See LOC113732693 in Genome Data Viewer
Location:
chromosome: 2e
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Cara_1.0 (GCF_003713225.1) 2e NC_039901.1 (61438296..61444530, complement)

Chromosome 2e - NC_039901.1Genomic Context describing neighboring genes Neighboring gene uncharacterized N-acetyltransferase p20-like Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene aldehyde oxidase GLOX-like Neighboring gene cell division cycle protein 27 homolog B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039901.1 Chromosome 2e Reference Cara_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable RNA helicase SDE3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coffea arabica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cara_1.0 Primary Assembly

Genomic

  1. NC_039901.1 Reference Cara_1.0 Primary Assembly

    Range
    61438296..61444530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027258623.1 → XP_027114424.1  probable RNA helicase SDE3 isoform X1

    UniProtKB/TrEMBL
    A0A6P6VWI0

  2. XM_027258624.1 → XP_027114425.1  probable RNA helicase SDE3 isoform X2

    UniProtKB/TrEMBL
    A0A6P6WGS8

  3. XM_027258621.1 → XP_027114422.1  probable RNA helicase SDE3 isoform X1

    UniProtKB/TrEMBL
    A0A6P6VWI0

  4. XM_027258622.1 → XP_027114423.1  probable RNA helicase SDE3 isoform X1

    UniProtKB/TrEMBL
    A0A6P6VWI0
Nucleotide Protein
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