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LOC113729318 beta-amyrin 28-monooxygenase-like [ Coffea arabica (coffee) ]

Gene ID: 113729318, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113729318
Gene description
beta-amyrin 28-monooxygenase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Coffea arabica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Genomic context

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See LOC113729318 in Genome Data Viewer
Location:
chromosome: 2e
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Cara_1.0 (GCF_003713225.1) 2e NC_039901.1 (61528726..61529334, complement)

Chromosome 2e - NC_039901.1Genomic Context describing neighboring genes Neighboring gene aldehyde oxidase GLOX-like Neighboring gene cell division cycle protein 27 homolog B-like Neighboring gene serine/threonine-protein kinase EDR1-like Neighboring gene uncharacterized LOC113732699 Neighboring gene uncharacterized LOC113732698

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039901.1 Chromosome 2e Reference Cara_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-amyrin 28-monooxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coffea arabica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cara_1.0 Primary Assembly

Genomic

  1. NC_039901.1 Reference Cara_1.0 Primary Assembly

    Range
    61528726..61529334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027253627.1 → XP_027109428.1  beta-amyrin 28-monooxygenase-like

    UniProtKB/TrEMBL
    A0A6P6W263
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases