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ikzf5 IKAROS family zinc finger 5 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113547733, updated on 15-Mar-2024

Summary

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Gene symbol
ikzf5
Gene description
IKAROS family zinc finger 5
Locus tag
PHYPO_G00011930
See related
EnsemblRapid:ENSPHYG00025001989
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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See ikzf5 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 10 NC_069719.1 (1736592..1750002)

Chromosome 10 - NC_069719.1Genomic Context describing neighboring genes Neighboring gene homeobox protein HMX3-A Neighboring gene H6 family homeobox 2 Neighboring gene CUB and zona pellucida-like domain-containing protein 1 Neighboring gene cubilin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069719.1 Chromosome 10 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Pegasus

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069719.1 Reference fPanHyp1.pri

    Range
    1736592..1750002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026948195.3 → XP_026803996.1  zinc finger protein Pegasus

    UniProtKB/TrEMBL
    A0A5N5N2Y9
    Related
    ENSPHYP00025003547.1, ENSPHYT00025004244.1
    Conserved Domains (2) summary
    sd00017
    Location:81 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:121 → 145
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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