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SCYGR2 small cysteine and glycine repeat containing 2 [ Homo sapiens (human) ]

Gene ID: 112441435, updated on 27-Nov-2024

Summary

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Official Symbol
SCYGR2provided by HGNC
Official Full Name
small cysteine and glycine repeat containing 2provided by HGNC
Primary source
HGNC:HGNC:34220
See related
Ensembl:ENSG00000284643 AllianceGenome:HGNC:34220
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KRTAP28-2
Summary
Predicted to be located in intermediate filament. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See SCYGR2 in Genome Data Viewer
Location:
2q36.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (227598893..227599255)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (228081554..228081880)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (228463609..228463971)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12399 Neighboring gene microRNA 5703 Neighboring gene ArfGAP with FG repeats 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:228451619-228452120 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12401 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_57064 Neighboring gene small cysteine and glycine repeat containing 9 (pseudogene) Neighboring gene MPRA-validated peak4071 silencer Neighboring gene solute carrier family 19 member 4, pseudogene Neighboring gene small cysteine and glycine repeat containing 10 (gene/pseudogene) Neighboring gene small cysteine and glycine repeat containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair. Wu DD, et al. BMC Evol Biol, 2008 Aug 23. PMID 18721477, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small cysteine and glycine repeat-containing protein 2
Names
keratin associated protein 28-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395403.1 → NP_001382332.1  small cysteine and glycine repeat-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    AC064853
    Consensus CDS
    CCDS92953.1
    UniProtKB/Swiss-Prot
    A0A286YFB4
    Related
    ENSP00000493300.1, ENST00000641394.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    227598893..227599255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    228081554..228081880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A286YFB4.1 GenPept UniProtKB/Swiss-Prot:A0A286YFB4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials