U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112422237 neurofilament heavy polypeptide-like [ Medicago truncatula (barrel medic) ]

Gene ID: 112422237, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC112422237
Gene description
neurofilament heavy polypeptide-like
Locus tag
MtrunA17_Chr5g0411461
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112422237 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (12966790..12972750, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (13056057..13062009, complement)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene probable sphingolipid transporter spinster homolog 2 Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic Neighboring gene transfer RNA leucine (anticodon UAG) Neighboring gene uncharacterized LOC112422033 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
neurofilament heavy polypeptide-like
Names
SPT2 chromatin protein
neurofilament heavy polypeptide
putative IQ motif, EF-hand binding, chromatin SPT2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    12966790..12972750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024785262.2 → XP_024641030.1  neurofilament heavy polypeptide-like

    UniProtKB/TrEMBL
    G7KF49
    Conserved Domains (1) summary
    smart00784
    Location:349 → 430
    SPT2; SPT2 chromatin protein

  2. XM_024785263.2 → XP_024641031.1  neurofilament heavy polypeptide-like

    UniProtKB/TrEMBL
    G7KF49
    Conserved Domains (1) summary
    smart00784
    Location:349 → 430
    SPT2; SPT2 chromatin protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases