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LOC112421943 AT-hook motif nuclear-localized protein 11-like [ Medicago truncatula (barrel medic) ]

Gene ID: 112421943, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112421943
Gene description
AT-hook motif nuclear-localized protein 11-like
Locus tag
MtrunA17_Chr5g0400601
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC112421943 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (4867618..4873107)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (4862170..4866400)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene acetylornithine deacetylase Neighboring gene uncharacterized LOC11434435 Neighboring gene transcription factor bHLH18 Neighboring gene zinc finger BED domain-containing protein DAYSLEEPER-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-hook motif nuclear-localized protein 11-like
Names
putative AT hook, DNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    4867618..4873107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024784153.2 → XP_024639921.2  AT-hook motif nuclear-localized protein 11-like

    Conserved Domains (1) summary
    cl00720
    Location:156 → 201
    DUF296; Domain of unknown function found in archaea, bacteria, and plants
Nucleotide Protein
Heading Accession and Version

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