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LOC112421113 disease resistance protein RPP4 [ Medicago truncatula (barrel medic) ]

Gene ID: 112421113, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112421113
Gene description
disease resistance protein RPP4
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC112421113 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (6979707..6981178, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (6502196..6503640, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene glucose-induced degradation protein 4 homolog Neighboring gene eukaryotic translation initiation factor 6-2 Neighboring gene disease resistance protein RUN1-like Neighboring gene protein PHLOEM PROTEIN 2-LIKE A8 Neighboring gene disease resistance protein RPV1 Neighboring gene TMV resistance protein N-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
disease resistance protein RPP4
Names
disease resistance protein (TIR-NBS-LRR class)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    6979707..6981178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024781409.2 → XP_024637177.1  disease resistance protein RPP4

    Conserved Domains (1) summary
    cl27891
    Location:35 → 380
    LRR_3; Leucine Rich Repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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