U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112421013 protein ALP1-like [ Medicago truncatula (barrel medic) ]

Gene ID: 112421013, updated on 7-Apr-2023

Summary

Go to the top of the page Help
Gene symbol
LOC112421013
Gene description
protein ALP1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112421013 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (5744073..5747744, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (5461558..5465294, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11422751 Neighboring gene uncharacterized LOC120580041 Neighboring gene receptor-like protein 35 Neighboring gene uncharacterized LOC11422483 Neighboring gene uncharacterized LOC11418185

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
protein ALP1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    5744073..5747744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024780919.2 → XP_024636687.1  protein ALP1-like isoform X1

    Conserved Domains (1) summary
    pfam13359
    Location:181 → 342
    DDE_Tnp_4; DDE superfamily endonuclease

  2. XM_039833962.1 → XP_039689896.1  protein ALP1-like isoform X2

    Conserved Domains (1) summary
    cl21562
    Location:200 → 318
    DDE_Tnp_4; DDE superfamily endonuclease

  3. XM_039833961.1 → XP_039689895.1  protein ALP1-like isoform X1

    Conserved Domains (1) summary
    pfam13359
    Location:181 → 342
    DDE_Tnp_4; DDE superfamily endonuclease
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases