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LOC112417474 zinc finger protein GAI-ASSOCIATED FACTOR 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 112417474, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112417474
Gene description
zinc finger protein GAI-ASSOCIATED FACTOR 1
Locus tag
MtrunA17_Chr8g0373541
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC112417474 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (35658397..35661525)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (33186043..33189158)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene acidic leucine-rich nuclear phosphoprotein 32-related protein Neighboring gene probable polyol transporter 6 Neighboring gene scarecrow-like protein 15 Neighboring gene G-box-binding factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein GAI-ASSOCIATED FACTOR 1
Names
protein indeterminate-domain 2
putative transcription factor C2H2 family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    35658397..35661525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024773245.2 → XP_024629013.1  zinc finger protein GAI-ASSOCIATED FACTOR 1

    UniProtKB/TrEMBL
    A0A396GNR0
    Conserved Domains (2) summary
    sd00017
    Location:140 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:62 → 84
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
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