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LOC112267992 uncharacterized LOC112267992 [ Homo sapiens (human) ]

Gene ID: 112267992, updated on 10-Dec-2024

Summary

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Gene symbol
LOC112267992
Gene description
uncharacterized LOC112267992
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC112267992 in Genome Data Viewer
Location:
7p22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (6950450..6960048, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (7069614..7079212, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:6941649-6942303 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:6942960-6943614 Neighboring gene EVA1C pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25635 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:6966495-6967257 Neighboring gene Sharpr-MPRA regulatory region 12753 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17960 Neighboring gene ALG1 like 5, pseudogene Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:6987342-6987842 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:6987843-6988343 Neighboring gene uncharacterized LOC107986763 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:7002367-7002866 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:7014635-7015357 Neighboring gene uncharacterized LOC105375138 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:7030918-7031104 Neighboring gene uncharacterized LOC124901585 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:7041754-7042392

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General protein information

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Preferred Names
uncharacterized protein LOC112267992

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    6950450..6960048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024447030.1 → XP_024302798.1  uncharacterized protein LOC112267992

    Conserved Domains (2) summary
    cl02808
    Location:164 → 327
    RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
    cl11403
    Location:2 → 81
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases

RNA

  1. XR_002956537.2 RNA Sequence

  2. XR_002956535.2 RNA Sequence

  3. XR_002956536.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    7069614..7079212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047445053.1 → XP_047301009.1  uncharacterized protein LOC112267992

RNA

  1. XR_007078239.1 RNA Sequence

  2. XR_007078237.1 RNA Sequence

  3. XR_007078238.1 RNA Sequence

  4. XR_007078240.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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