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LOC110437745 E3 ubiquitin-protein ligase TRIM11 [ Danio rerio (zebrafish) ]

Gene ID: 110437745, updated on 12-Sep-2024

Summary

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Gene symbol
LOC110437745
Gene description
E3 ubiquitin-protein ligase TRIM11
See related
Ensembl:ENSDARG00000103362
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC110437745 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (48004549..48010517, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene ephrin type-A receptor 7 Neighboring gene zgc:158376 Neighboring gene catenin, beta 2 Neighboring gene si:ch1073-205c8.3 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene karyopherin (importin) beta 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007130.7 Chromosome 19 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    48004549..48010517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468193.2 → XP_021323868.1  E3 ubiquitin-protein ligase TRIM11

    UniProtKB/TrEMBL
    A0A0H2UKT0, A0A8M9PB84
    Related
    ENSDARP00000138659.2, ENSDART00000159938.3
    Conserved Domains (5) summary
    cd13733
    Location:407 → 575
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
    pfam00643
    Location:152 → 191
    zf-B_box; B-box zinc finger
    cl17238
    Location:10 → 53
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl25732
    Location:213 → 393
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28410
    Location:8 → 99
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Nucleotide Protein Strain
Heading Accession and Version

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