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LOC110121042 VISTA enhancer hs1257 [ Homo sapiens (human) ]

Gene ID: 110121042, updated on 10-Dec-2024

Summary

Gene symbol
LOC110121042
Gene description
VISTA enhancer hs1257
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in embryonic hindbrain and trigeminal V ganglion of transgenic mice. A subregion associated with the OCT4 and NANOG transcription factors was also shown to be an active enhancer by ChIP-STARR-seq in primed human embryonic stem cells. [provided by RefSeq, Nov 2022]
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Genomic context

See LOC110121042 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (218034090..218035156)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (217268822..217269888)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (218207432..218208498)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 17 Neighboring gene ubiquitin B pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:218074629-218075249 Neighboring gene long intergenic non-protein coding RNA 210 Neighboring gene uncharacterized LOC105372922 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:218138659-218139159 Neighboring gene long intergenic non-protein coding RNA 1653 Neighboring gene RNA, U1 small nuclear 141, pseudogene

Genomic regions, transcripts, and products

General gene information

Other Names

  • OCT4-NANOG hESC enhancer GRCh37_chr1:218207731-218208267

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053662.1 

    Range
    101..1167
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    218034090..218035156
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    217268822..217269888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)