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LOC110008567 pentatricopeptide repeat-containing protein At5g24830-like [ Amborella trichopoda ]

Gene ID: 110008567, updated on 21-Dec-2023

Summary

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Gene symbol
LOC110008567
Gene description
pentatricopeptide repeat-containing protein At5g24830-like
Locus tag
AMTR_s00001p00269540
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC110008567 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006495273.1 (9565043..9566450)

NW_006495273.1Genomic Context describing neighboring genes Neighboring gene probable glutathione S-transferase Neighboring gene probable glutathione S-transferase Neighboring gene uncharacterized LOC110006390 Neighboring gene probable glutathione S-transferase Neighboring gene probable inactive leucine-rich repeat receptor kinase XIAO

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006495273.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At5g24830-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006495273.1 Reference AMTR1.0 Primary Assembly

    Range
    9565043..9566450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020676632.1 → XP_020532291.1  pentatricopeptide repeat-containing protein At5g24830-like

    Conserved Domains (2) summary
    sd00004
    Location:189 → 216
    PPR; PPR repeat [structural motif]
    cl25449
    Location:45 → 427
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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