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LOC110008443 pentatricopeptide repeat-containing protein At1g06143-like [ Amborella trichopoda ]

Gene ID: 110008443, updated on 21-Dec-2023

Summary

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Gene symbol
LOC110008443
Gene description
pentatricopeptide repeat-containing protein At1g06143-like
Locus tag
AMTR_s00062p00188560
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC110008443 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006500347.1 (3287941..3288429)

NW_006500347.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105421724 Neighboring gene uncharacterized LOC110008436 Neighboring gene uncharacterized LOC110008435 Neighboring gene uncharacterized LOC110008438

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006500347.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At1g06143-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006500347.1 Reference AMTR1.0 Primary Assembly

    Range
    3287941..3288429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020675889.1 → XP_020531548.1  pentatricopeptide repeat-containing protein At1g06143-like

    Conserved Domains (2) summary
    sd00004
    Location:18 → 45
    PPR; PPR repeat [structural motif]
    cl25449
    Location:4 → 145
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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