U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

map1lc3b microtubule-associated protein 1 light chain 3 beta [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109640735, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Gene symbol
map1lc3b
Gene description
microtubule-associated protein 1 light chain 3 beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
MAP1-LC3B
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See map1lc3b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_10 current ASM2471397v2 (GCF_024713975.1) 7 NC_091099.1 (2887799..2895375, complement)
100 previous assembly Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859756.1 (238659..241780)

Chromosome 7 - NC_091099.1Genomic Context describing neighboring genes Neighboring gene kelch domain containing 4 Neighboring gene junctophilin 3b Neighboring gene zinc finger, CCHC domain containing 14 Neighboring gene DET1 partner of COP1 E3 ubiquitin ligase Neighboring gene uncharacterized LOC138410859

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Induction of autophagy by amino acid starvation in fish cells. Yabu T, et al. Mar Biotechnol (NY), 2012 Aug. PMID 22290406, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
microtubule-associated proteins 1A/1B light chain 3B
Names
microtubule-associated protein 1-light chain 3 B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_024713975.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2471397v2 Primary Assembly

Genomic

  1. NC_091099.1 Reference ASM2471397v2 Primary Assembly

    Range
    2887799..2895375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069528786.1 → XP_069384887.1  microtubule-associated proteins 1A/1B light chain 3B

    UniProtKB/TrEMBL
    B9ZZT3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.