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LOC108863617 -8.7 kb enhancer upstream of Gfi1 [ Mus musculus (house mouse) ]

Gene ID: 108863617, updated on 9-Aug-2024

Summary

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Gene symbol
LOC108863617
Gene description
-8.7 kb enhancer upstream of Gfi1
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366750
Summary
This genomic element is located approximately 8.7 kb upstream of the Gfi1 (growth factor independent 1) gene on chromosome 5. It is one of several regulatory regions in the vicinity of the Gfi1 gene. It can function as an enhancer of the heterologous SV40 promoter in reporter gene assays in stably transfected MOLT4 T lymphoblasts. [provided by RefSeq, Oct 2016]
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Genomic context

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See LOC108863617 in Genome Data Viewer
Location:
5 F
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (107878447..107880598)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (107730581..107732732)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930428O21 gene Neighboring gene +19.5 kb enhancer downstream of Gfi1 Neighboring gene Gfi1 +5.8 kb enhancer Neighboring gene Gfi1 promoter regions Neighboring gene growth factor independent 1 transcription repressor Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:108168116-108168348 Neighboring gene predicted gene, 42147 Neighboring gene Gfi1 -35 kb enhancer Neighboring gene ecotropic viral integration site 5 Neighboring gene STARR-seq mESC enhancer starr_13892 Neighboring gene ubiquitin-conjugating enzyme E2D 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gfi1 expression is controlled by five distinct regulatory regions spread over 100 kilobases, with Scl/Tal1, Gata2, PU.1, Erg, Meis1, and Runx1 acting as upstream regulators in early hematopoietic cells. Wilson NK, et al. Mol Cell Biol, 2010 Aug. PMID 20516218, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 366750

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051669.1 

    Range
    101..2252
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    107878447..107880598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version