U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC108191765 cadherin-related family member 1a [ Danio rerio (zebrafish) ]

Gene ID: 108191765, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC108191765
Gene description
cadherin-related family member 1a
See related
Ensembl:ENSDARG00000104756
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC108191765 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (48978300..48996336, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (48956771..48973327, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene calcium-activated potassium channel subunit alpha-1-like Neighboring gene retinal G protein coupled receptor b Neighboring gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b Neighboring gene growth hormone inducible transmembrane protein Neighboring gene carbohydrate (chondroitin 6) sulfotransferase 3b Neighboring gene uncharacterized LOC108191766 Neighboring gene protein mago nashi homolog Neighboring gene zinc finger protein 503

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
cadherin-related family member 1a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    48978300..48996336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017358609.3 → XP_017214098.2  cadherin-related family member 1a

    UniProtKB/TrEMBL
    A0A8M6Z246
    Related
    ENSDARP00000131471.2, ENSDART00000169696.2
    Conserved Domains (1) summary
    cd11304
    Location:142 → 243
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases