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glipr1a GLI pathogenesis-related 1a [ Danio rerio (zebrafish) ]

Gene ID: 108179203, updated on 4-Jan-2025

Summary

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Official Symbol
glipr1aprovided by ZNC
Official Full Name
GLI pathogenesis-related 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-110309-2
See related
Ensembl:ENSDARG00000045224 AllianceGenome:ZFIN:ZDB-GENE-110309-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in extracellular region and membrane. Orthologous to several human genes including GLIPR1 (GLI pathogenesis related 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

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See glipr1a in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (2252092..2259005)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (2402746..2409688)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene si:ch73-278m9.1 Neighboring gene cytidine monophospho-N-acetylneuraminic acid hydroxylase Neighboring gene cAMP-regulated D2 protein Neighboring gene KRR1 small subunit processome component homolog Neighboring gene pleckstrin homology-like domain, family A, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Expression of nucleosome assembly protein 1 like genes in zebrafish embryos. Sun S, et al. Gene Expr Patterns, 2020 Jan. PMID 31669493
  2. Characterization of boscalid-induced oxidative stress and neurodevelopmental toxicity in zebrafish embryos. Wang H, et al. Chemosphere, 2020 Jan. PMID 31545217
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
GLIPR1-like protein 1; glioma pathogenesis-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    2252092..2259005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021475192.2 → XP_021330867.1  glioma pathogenesis-related protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PHP4
    Conserved Domains (1) summary
    cd05385
    Location:31 → 181
    SCP_GLIPR-1_like; SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and ...

  2. XM_068220713.1 → XP_068076814.1  glioma pathogenesis-related protein 1 isoform X3

  3. XM_017355245.3 → XP_017210734.1  GLIPR1-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M6YY67
    Related
    ENSDARP00000138527.1, ENSDART00000163996.2
Nucleotide Protein Strain
Heading Accession and Version

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