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Gm45952 predicted gene, 45952 [ Mus musculus (house mouse) ]

Gene ID: 108167345, updated on 22-Oct-2024

Summary

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Official Symbol
Gm45952provided by MGI
Official Full Name
predicted gene, 45952provided by MGI
Primary source
MGI:MGI:5825589
See related
Ensembl:ENSMUSG00000130838 AllianceGenome:MGI:5825589
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 6.1), CNS E14 (RPKM 0.8) and 10 other tissues See more
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Genomic context

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See Gm45952 in Genome Data Viewer
Location:
4 B1; 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (49630658..49631952, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (49630658..49631952, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene post-GPI attachment to proteins GalNAc transferase 4 Neighboring gene predicted gene, 33106 Neighboring gene STARR-seq mESC enhancer starr_10187 Neighboring gene predicted gene, 33159 Neighboring gene STARR-positive B cell enhancer ABC_E2112 Neighboring gene ring finger protein 20 Neighboring gene glutamate receptor ionotropic, NMDA3A Neighboring gene protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168526.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL732521
    Related
    ENSMUST00000302230.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    49630658..49631952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version