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LOC108167308 Rab34 Hedgehog-responsive enhancer [ Mus musculus (house mouse) ]

Gene ID: 108167308, updated on 9-Aug-2024

Summary

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Gene symbol
LOC108167308
Gene description
Rab34 Hedgehog-responsive enhancer
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366688
Summary
This genomic region overlaps the Rab34 (RAB34, member RAS oncogene family) gene. This region was predicted to be a Hedgehog (Hh)-responsive enhancer based on its association with Gli1 (GLI-Kruppel family member GLI1), and it was validated as a functional Hh-responsive enhancer in both transient and transgenic mice reporter assays. [provided by RefSeq, Jun 2016]
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Genomic context

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See LOC108167308 in Genome Data Viewer
Location:
11 B5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (78080365..78080597)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (78189539..78189771)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5250 Neighboring gene small nucleolar RNA, C/D box 4A Neighboring gene ribosomal protein L23A Neighboring gene small nucleolar RNA, C/D box 42B Neighboring gene RAB34, member RAS oncogene family Neighboring gene protein interacting with cyclin A1 Neighboring gene SPT6, histone chaperone and transcription elongation factor Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:78029402-78029555

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Vokes SA, et al. Development, 2007 May. PMID 17442700

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • RAB34, member RAS oncogene family Gli1-inducible enhancer
  • regulatory region 366688

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_050897.1 

    Range
    101..333
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    78080365..78080597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version