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LOC107986913 uncharacterized LOC107986913 [ Homo sapiens (human) ]

Gene ID: 107986913, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107986913
Gene description
uncharacterized LOC107986913
See related
Ensembl:ENSG00000305749
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986913 in Genome Data Viewer
Location:
8p23.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (8460425..8467471)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11275926..11282972, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:8256091-8256704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8269459-8270166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8270167-8270872 Neighboring gene long intergenic non-protein coding RNA 2949 Neighboring gene Sharpr-MPRA regulatory region 2598 Neighboring gene long intergenic non-protein coding RNA 2950 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:8324360-8325559 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:8328681-8329307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18897 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18898 Neighboring gene Sharpr-MPRA regulatory region 7090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26968 Neighboring gene uncharacterized LOC105379224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26969 Neighboring gene RNA, 7SL, cytoplasmic 178, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    8460425..8467471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745796.2 RNA Sequence

  2. XR_001745797.2 RNA Sequence

    Related
    ENST00000812768.1

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    4884990..4891693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959154.2 RNA Sequence

  2. XR_002959155.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11275926..11282972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078716.1 RNA Sequence

  2. XR_007078717.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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