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LOC107986392 uncharacterized LOC107986392 [ Homo sapiens (human) ]

Gene ID: 107986392, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107986392
Gene description
uncharacterized LOC107986392
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986392 in Genome Data Viewer
Location:
5q35.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (171574083..171580427)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (172114450..172120945)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16610 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16611 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170861243-170861778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170864190-170864698 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170872656-170873222 Neighboring gene fibroblast growth factor 18 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170877967-170878538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170881203-170881704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170888154-170889127 Neighboring gene uncharacterized LOC105377721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170906189-170907025 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170907026-170907861 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170920637-170921484 Neighboring gene uncharacterized LOC105377720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170946153-170946685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170946686-170947219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170947220-170947752 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170949355-170949886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170955957-170956456 Neighboring gene uncharacterized LOC105377722 Neighboring gene uncharacterized LOC124901134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171042917-171043902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171045888-171046390 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:171050255-171051075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171071283-171071784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171071785-171072284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:171094673-171095251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:171095252-171095829 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:171106695-171107194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:171125320-171125820 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:171125821-171126321 Neighboring gene uncharacterized LOC105377724 Neighboring gene uncharacterized LOC105377723

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    171574083..171580427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742537.2 RNA Sequence

  2. XR_007059047.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    172114450..172120945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076109.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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